ZincBind

ZincBind MCP Server provides programmatic access to the ZincBindDB GraphQL API, enabling you to query zinc binding sites, PDB structures, and related biochemical data through a Cloudflare Workers-backed MCP interface. You can use it with MCP clients to explore zinc coordination in proteins, multi-metal sites, and binding geometries at scale.

How to use

You connect to the ZincBind MCP Server from your MCP client to run queries that retrieve zinc binding site data, zinc-coordinated PDB entries, and related biochemical information. Start from your client’s MCP configuration and point it at the server’s endpoint or use a lightweight helper to route queries through the MCP layer. You can perform a variety of queries to inspect binding sites, related residues, and structural context such as PDB titles and site classifications.

How to install

Prerequisites you need before installation are listed here. Ensure these are installed and available in your shell.

Additional notes

Local development and deployment steps are provided to help you run the MCP server in development and deploy to Cloudflare Workers. The server exposes an endpoint for MCP clients to connect and begin querying ZincBindDB data. If you plan to build locally, you will run commands to install dependencies, start a dev server, and then deploy to Cloudflare.

Available tools

zincbind_db_graphql_query

Execute GraphQL queries against the ZincBindDB API to retrieve zinc binding site data, PDB entries, and related structures.